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| -Genomic Data |
Links |
- Protein
- Atf1
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- UniPROBE Accession Number
- UP00020
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- Species
- Mus musculus
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- Domain
- BRLZ, BZIP_1, BZIP_2
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- Uniprot
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P81269
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- Name and Synonyms
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activating transcription factor 1
Activating transcription factor 1, Cyclic AMP-dependent transcription factor ATF-1, TCR-ATF1
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- IHOP
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119577
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- RefSeq
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NP_031523
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- Description
- Mus musculus activating transcription factor 1 (Atf1), mRNA
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- JASPAR
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N/A
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| -PBM Motif Data for Atf1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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TGACGTCA E.S. 0.497
TGACGTCA E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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ATGACG..TA E.S. 0.424
TA..CGTCAT E.S. 0.424
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3026)
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- PWM
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View
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- Consensus
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VTKAYGHNNN
NNNDCRTMAB
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3026)
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- PWM
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View
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- Consensus
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NRNHBNNNNN
NNNNNVDNYN
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- Downloads
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Download the
zip
of all Atf1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Atf1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=20&sourceDB=uniprobe
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| -Atf1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3026 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3026 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH3026 insert sequence
- 1 MTSPVTLTSQ TTKTDDPQLR REIRLMKNRE AARECRRKKK EYVKCLENRV
51 AVLENQNKTL IEELKTLKDL YSHKSV
- DNA Binding Domains (Pfam) for clone 3026
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Region 16..75
1 DPQLRREIRL MKNREAAREC RRKKKEYVKC LENRVAVLEN QNKTLIEELK
51 TLKDLYSHKS
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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