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| -Genomic Data |
Links |
- Protein
- Foxk1
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- UniPROBE Accession Number
- UP00025
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- Species
- Mus musculus
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- Domain
- Fork_head
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- Uniprot
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P42128
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- Name and Synonyms
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forkhead box K1
A630048H08Rik, AI463295, C330006K01Rik, Forkhead box protein K1, Mnf, MNF, Myocyte nuclear factor
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- IHOP
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122823
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- RefSeq
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NP_951031
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- Description
- Mus musculus forkhead box K1 (Foxk1), transcript variant 1, mRNA.
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- JASPAR
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N/A
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| -PBM Motif Data for Foxk1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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A.GTAAACA E.S. 0.498
TGTTTAC.T E.S. 0.498
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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A.AACAACA E.S. 0.491
TGTTGTT.T E.S. 0.491
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2323)
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- PWM
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View
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- Consensus
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NNRWMAAYAN
NTRTTKWYNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2323)
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- PWM
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View
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- Consensus
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NNVNHHAYAN
NTRTDDNBNN
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- Downloads
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Download the
zip
of all Foxk1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Foxk1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=25&sourceDB=uniprobe
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| -Foxk1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2323 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2323 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2323 insert sequence
- 1 SEQQADASGG DSPKDESKPP YSYAQLIVQA ISSAQDRQLT LSGIYAHITK
51 HYPYYRTADK GWQNSIRHNL SLNRYFIKVP RSQEEPGKGS FWRIDPASEA
101 KLVEQAFRKR RQRGVSCFRT PFGPLSSR
- DNA Binding Domains (Pfam) for clone 2323
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Region 18..113
1 KPPYSYAQLI VQAISSAQDR QLTLSGIYAH ITKHYPYYRT ADKGWQNSIR
51 HNLSLNRYFI KVPRSQEEPG KGSFWRIDPA SEAKLVEQAF RKRRQR
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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