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| -Genomic Data |
Links |
- Protein
- Bcl6b
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- UniPROBE Accession Number
- UP00043
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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O88282
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- Name and Synonyms
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B-cell CLL/lymphoma 6, member B
Bazf, B-cell CLL/lymphoma 6 member B protein, Bcl6-associated zinc finger protein
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- IHOP
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119651
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- RefSeq
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NP_031554
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- Description
- Mus musculus B-cell CLL/lymphoma 6, member B, mRNA
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- JASPAR
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N/A
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| -PBM Motif Data for Bcl6b |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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TTC.AGGAA E.S. 0.479
TTCCT.GAA E.S. 0.479
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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CCGCCCCA E.S. 0.456
TGGGGCGG E.S. 0.456
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH0961)
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- PWM
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View
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- Consensus
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HHTYBARKDW
WHMYTVRADD
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0961)
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- PWM
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View
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- Consensus
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NNNNNNNNNN
NNNNNNNNNN
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- Downloads
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Download the
zip
of all Bcl6b PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Bcl6b
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=43&sourceDB=uniprobe
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| -Bcl6b Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH961 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH961 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH961 insert sequence
- 1 SSGLELLAPG DEDKPYKCQL CRSAFRYKGN LASHRTVHTG EKPYRCSICG
51 ARFNRPANLK THSRIHSGEK PYKCETCGSR FVQVAHLRAH VLIHTGEKPY
101 PCPTCGTRFR HLQTLKSHVR IHTGEKPYHC DPCGLHFRHK SQLRLHLRQK
151 HGAATNTKVR YHILGG
- DNA Binding Domains (Pfam) for clone 961
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Region 16..38
1 YKCQLCRSAF RYKGNLASHR TVH
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Region 44..66
1 YRCSICGARF NRPANLKTHS RIH
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Region 72..94
1 YKCETCGSRF VQVAHLRAHV LIH
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Region 100..122
1 YPCPTCGTRF RHLQTLKSHV RIH
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Region 128..151
1 YHCDPCGLHF RHKSQLRLHL RQKH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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