|
|
| -Genomic Data |
Links |
- Protein
- Rxra
|
- UniPROBE Accession Number
- UP00053
|
- Species
- Mus musculus
|
- Domain
- ZnF_C4
|
- Uniprot
-
P28700
|
- Name and Synonyms
-
retinoid X receptor alpha
9530071D11Rik, Nr2b1, Retinoic acid receptor RXR-alpha, Retinoid X receptor alpha, RXRalpha1, RXR alpha 1
|
- IHOP
-
124412
|
- RefSeq
-
NP_035435
|
- Description
- retinoid X receptor alpha (Rxra), mRNA
|
- JASPAR
-
N/A
|
| -PBM Motif Data for Rxra |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
C.TGACCCC E.S. 0.496
GGGGTCA.G E.S. 0.496
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
AAAGGTCA E.S. 0.432
TGACCTTT E.S. 0.432
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH1035)
-
|
- PWM
-
View
|
- Consensus
-
NRRGGTCANN
NNTGACCYYN
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH1035)
-
|
- PWM
-
View
|
- Consensus
-
NRRGGTCANN
NNTGACCYYN
|
- Downloads
-
Download the
zip
of all Rxra PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Rxra
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=53&sourceDB=uniprobe
|
| -Rxra Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH1035 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH1035 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
|
|
- Clone pTH1035 insert sequence
- 1 LKVPAHPSGN MASFTKHICA ICGDRSSGKH YGVYSCEGCK GFFKRTVRKD
51 LTYTCRDNKD CLIDKRQRNR CQYCRYQKCL AMGMKREAVQ EERQRGKDRN
101 ENEVEST
- DNA Binding Domains (Pfam) for clone 1035
-
Region 17..92
1 HICAICGDRS SGKHYGVYSC EGCKGFFKRT VRKDLTYTCR DNKDCLIDKR
51 QRNRCQYCRY QKCLAMGMKR EAVQEE
-
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|