Protein Details

-Genomic Data				Links
Protein Sox21	UniPROBE Accession Number UP00071	Species Mus musculus	Domain HMG_box	Uniprot Q811W0
Name and Synonyms SRY-box containing gene 21 Transcription factor SOX-21				IHOP 152619
				RefSeq NP_808421
Description None Available				JASPAR N/A

-PBM Motif Data for Sox21
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer ATTATAAT E.S. 0.485 ATTATAAT E.S. 0.485
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer AATTGTTC E.S. 0.478 GAACAATT E.S. 0.478
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3417)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3417)				Consensus NNNNNWBAAW WTTVWNNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3417)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3417)				Consensus TTCGAGTGTC GACACTCGAA
Downloads Download the zip of all Sox21 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Sox21 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=71&sourceDB=uniprobe

-Sox21 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3417	#1	AMADID #016060	IVT	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3417	#1	AMADID #015681	IVT	DNA binding domain only	2014-08-13
Clone pTH3417 insert sequence `1 MSKPVDHVKR PMNAFMVWSR GQRRKMAQEN PKMHNSEISK RLGAEWKLLT 51 ESEKRPFIDE AKRLRAMHMK EHPDYKYRPR RKPKTLLKKD KF` DNA Binding Domains (Pfam) for clone 3417 Region 8..76 `1 VKRPMNAFMV WSRGQRRKMA QENPKMHNSE ISKRLGAEWK LLTESEKRPF 51 IDEAKRLRAM HMKEHPDYK`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`