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| -Genomic Data |
Links |
- Protein
- Esrra
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- UniPROBE Accession Number
- UP00079
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- Species
- Mus musculus
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- Domain
- ZnF_C4
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- Uniprot
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O08580
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- Name and Synonyms
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estrogen related receptor, alpha
Err1, ERRalpha, ERR-alpha, Estrogen receptor-like 1, Estrogen-related receptor, alpha, Estrra, Nr3b1, Steroid hormone receptor ERR1
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- IHOP
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126322
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- RefSeq
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NP_031979
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- Description
- Mus musculus estrogen related receptor, alpha (Esrra), mRNA.
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- JASPAR
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N/A
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| -PBM Motif Data for Esrra |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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CAAGGTCA E.S. 0.499
TGACCTTG E.S. 0.499
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AGGGGTCA E.S. 0.495
TGACCCCT E.S. 0.495
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2190)
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- PWM
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View
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- Consensus
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NVRAGGTCAN
NTGACCTYBN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2190)
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- PWM
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View
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- Consensus
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DTGACCTTBN
NVAAGGTCAH
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- Downloads
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Download the
zip
of all Esrra PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Esrra
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=79&sourceDB=uniprobe
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| -Esrra Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2190 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2190 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2190 insert sequence
- 1 GEQGSGKLVL SSLPKRLCLV CGDVASGYHY GVASCEACKA FFKRTIQGSI
51 EYSCPASNEC EITKRRRKAC QACRFTKCLR VGMLKEGVRL DRVRGGRQKY
- DNA Binding Domains (Pfam) for clone 2190
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Region 16..91
1 RLCLVCGDVA SGYHYGVASC EACKAFFKRT IQGSIEYSCP ASNECEITKR
51 RRKACQACRF TKCLRVGMLK EGVRLD
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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