-Genomic Data Links
Protein
Plagl1
UniPROBE Accession Number
UP00088
Species
Mus musculus
Domain
zf-C2H2
Uniprot
O35745
Name and Synonyms
Pleiomorphic adenoma gene-like 1
Lot1, Zac1
IHOP
126008
RefSeq
NP_033564
Description
Mus musculus similar to zinc finger protein regulator of apoptosis and cell cycle arrest (Zac1), mRNA
JASPAR
N/A
-PBM Motif Data for Plagl1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
GGGGCCCC E.S. 0.499
GGGGCCCC E.S. 0.499
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
GGGGGTAC E.S. 0.493
GTACCCCC E.S. 0.493
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH0972)
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PWM
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Consensus
NDGGGGSNNN
NNNSCCCCHN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0972)
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PWM
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Consensus
NNGGGGBNNN
NNNVCCCCNN
Downloads
Download the zip of all Plagl1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Plagl1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=88&sourceDB=uniprobe

-Plagl1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH972 #1 AMADID #016060 E. coli DNA binding domain only 2014-08-13 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH972 #1 AMADID #015681 E. coli DNA binding domain only 2014-08-13 save search
Clone pTH972 insert sequence
1    APFRCQKCGK SFVTLEKFTI HNYSHSRERP FKCSKAECGK AFVSKYKLMR
51   HMATHSPQKI HQCTHCEKTF NRKDHLKNHL QTHDPNKISY ACDDCGKKYH
101  TMLGYKRHLA LHSASNGDLT CGVCTLELGS TEVLLDHLKS HAEEKANQAP
151  REKKYQCDHC DRCFYTRKDV RRHLVVHTGC KDFLCQFCAQ RFGRKDHLTR
201  HTKKTHSQEL MQENMQAGDY Q

DNA Binding Domains (Pfam) for clone 972
Region 3..25
1   FRCQKCGKSF VTLEKFTIHN YSH

Region 31..55
1   FKCSKAECGK AFVSKYKLMR HMATH

Region 61..83
1   HQCTHCEKTF NRKDHLKNHL QTH

Region 90..112
1   YACDDCGKKY HTMLGYKRHL ALH

Region 155..177
1   YQCDHCDRCF YTRKDVRRHL VVH

Region 183..206
1   FLCQFCAQRF GRKDHLTRHT KKTH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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