Protein Details

-Genomic Data				Links
Protein Sox5	UniPROBE Accession Number UP00091	Species Mus musculus	Domain HMG_box	Uniprot P35710
Name and Synonyms SRY-box containing gene 5 AI528773, MGC124352, Sox-5, Transcription factor SOX-5				IHOP 124783
				RefSeq NP_035574
Description None Available				JASPAR MA0087

-PBM Motif Data for Sox5
Primary Motif (Seed-And-Wobble)				Primary PWM View Save
Primary Motif (Seed-And-Wobble)				Top Kmer GAACAATA E.S. 0.489 TATTGTTC E.S. 0.489
Secondary Motif (Seed-And-Wobble)				Secondary PWM View Save
Secondary Motif (Seed-And-Wobble)				Top Kmer CATAATT.A E.S. 0.396 T.AATTATG E.S. 0.396
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3459)				PWM View
Motif (BEEML-PBM) (AMADID # 015681) (clone pTH3459)				Consensus NNNNVACAAT ATTGTBNNNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3459)				PWM View
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3459)				Consensus NNNNNHVNNN NNNBDNNNNN
Downloads Download the zip of all Sox5 PBM files or view the downloads directory for individual files.
Link to TFBSshape This link will take you to the corresponding entry for Sox5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites. http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=91&sourceDB=uniprobe

-Sox5 Datasets
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3459	#1	AMADID #016060	E. coli	DNA binding domain only	2014-08-13
Clone ID	Expression	Array Version	Expression Protocol	Clone Type	Last Modified	Save	View
pTH3459	#1	AMADID #015681	E. coli	DNA binding domain only	2014-08-13
Clone pTH3459 insert sequence `1 SRIYRESRGR GSNEPHIKRP MNAFMVWAKD ERRKILQAFP DMHNSNISKI 51 LGSRWKAMTN LEKQPYYEEQ ARLSKQHLEK YPDYKYKPRP KRTCLVDGKK 101 L` DNA Binding Domains (Pfam) for clone 3459 Region 17..85 `1 IKRPMNAFMV WAKDERRKIL QAFPDMHNSN ISKILGSRWK AMTNLEKQPY 51 YEEQARLSKQ HLEKYPDYK`
References `Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009`