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| -Genomic Data |
Links |
- Protein
- Zfp128
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- UniPROBE Accession Number
- UP00094
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- Species
- Mus musculus
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- Domain
- zf-C2H2
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- Uniprot
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Q52KP6
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- Name and Synonyms
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zinc finger protein 128
9630016P15Rik, MGC113768, mZnf8, Znf8
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- IHOP
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155452
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- RefSeq
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NP_722497
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- Description
- Zinc finger protein 128 [Mus musculus]
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- JASPAR
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N/A
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| -PBM Motif Data for Zfp128 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GGCGTACC E.S. 0.496
GGTACGCC E.S. 0.496
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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TATA..TATA E.S. 0.453
TATA..TATA E.S. 0.453
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2806)
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- PWM
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View
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- Consensus
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NNNNCNNNNN
NNNNNGNNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2806)
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- PWM
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View
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- Consensus
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NNGTAYGHHN
NDDCRTACNN
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- Downloads
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Download the
zip
of all Zfp128 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Zfp128
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=94&sourceDB=uniprobe
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| -Zfp128 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2806 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2806 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2806 insert sequence
- 1 MPITELTKSQ VQDKPYKCTD CGKSFNHNAH LTVHKRIHTG ERPYMCKECG
51 KAFSQNSSLV QHERIHTGDK PYKCDECGKS FCHSTHLTVH RRIHTGEKPY
101 ECQDCGRAFN QNSSLGRHKR THTGEKPYTC SVCGKSFSRT TCLFLHLRTH
151 TEERPYECNH CGKGFRHSSS LAQHQRKHAG EKPYECRQRL IFEQAPALIK
201 YEWTEPLGCD SPLSQGERTQ RSDRPFKCNQ CGKCFTQSSH LIRHQLTHSR
251 EEEPLRGRSR RQE
- DNA Binding Domains (Pfam) for clone 2806
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Region 16..38
1 YKCTDCGKSF NHNAHLTVHK RIH
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Region 44..66
1 YMCKECGKAF SQNSSLVQHE RIH
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Region 72..94
1 YKCDECGKSF CHSTHLTVHR RIH
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Region 100..122
1 YECQDCGRAF NQNSSLGRHK RTH
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Region 128..150
1 YTCSVCGKSF SRTTCLFLHL RTH
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Region 156..178
1 YECNHCGKGF RHSSSLAQHQ RKH
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Region 226..248
1 FKCNQCGKCF TQSSHLIRHQ LTH
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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