-Genomic Data for LUX Links
Protein
LUX
UniPROBE Accession Number
UP00552
Species
Arabidopsis thaliana
Domain
None Available
Swiss-Prot
Q9SNB4
Name and Synonyms
Name: Transcription factor LUX.
Synonyms:LUX ARRHYTHMO; PCL1; PHYTOCLOCK 1
IHOP
9166
NCBI RefSeq
NP_190248
Description
Transcription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcr
JASPAR
None Available
-PBM Motif Data for LUX
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
...AAGATTCG... E.S. 0.492
...CGAATCTT... E.S. 0.492
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
...AGATACGG... E.S. 0.490
...CCGTATCT... E.S. 0.490
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 015681)
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PWM
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Consensus
NAGATHYNNH
DNNRDATCTN
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 016060)
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PWM
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Consensus
NDGATWYKVN
NBMRWATCHN
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
...AGATTCGC... E.S. 0.494
...GCGAATCT... E.S. 0.494
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
...AGATACGG... E.S. 0.489
...CCGTATCT... E.S. 0.489
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 015681)
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PWM
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Consensus
NAGATHYDNH
DNHRDATCTN
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 016060)
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PWM
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Consensus
NDGATHYBVN
NBVRDATCHN
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
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Top Kmer
...AGATTCGC... E.S. 0.494
...GCGAATCT... E.S. 0.494
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available. We apologize for the inconvenience.
PWM
Save
Top Kmer
...AGATACGG... E.S. 0.489
...CCGTATCT... E.S. 0.489
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 015681)
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PWM
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Consensus
NWGATHYKNH
DNMRDATCWN
PBM-Derived DNA Binding Site Motif (BEEML-PBM) (AMADID # 016060)
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PWM
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Consensus
NWGATHYKVN
NBMRDATCWN
Downloads
Download the zip of all LUX PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-LUX Datasets
Gene Clone Type Last Modified Save View
LUX Full length clone 2014-09-07 search save
LUX Insert Sequence
1    MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI
51   TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101  SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT
151  PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201  RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT
251  QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301  MQQNKFGSMA SYPSVGGGSA NEN


References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Helfer et al., Curr Biol 2011


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