Protein Details

-Genomic Data for VND7				Links
Protein VND7	UniPROBE Accession Number UP00580	Species Arabidopsis thaliana	Domain NAC	Swiss-Prot Q9C8W9
Name and Synonyms Name: vascular related NAC-domain protein 7. Synonyms:ANAC030, Arabidopsis NAC domain containing protein 30, ARABIDOPSIS NAC-DOMAIN PROTEIN 030, F17M19_8, F17M19.8, vascular related NAC-domain protein 7, VASCULAR RELATED NAC-DOMAIN PROTEIN 7				IHOP 28773
				NCBI Acc. NM_105851
Description Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (e.g. genes involved in secondary wall biosynthesis, cell wall modification such as xylan accumulation, and programmed cell death). Involved in xylem formation in roots and shoots, especially regulating pro				JASPAR None Available

-PBM Motif Data for VND7
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				PWM Save
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				Top Kmer ACACG.AAC E.S. 0.491 GTT.CGTGT E.S. 0.491
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				PWM Save
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)				Top Kmer ACACG.AAC E.S. 0.492 GTT.CGTGT E.S. 0.492
Downloads Download the zip of all VND7 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-VND7 Datasets
Clone	Clone Type	Last Modified	Save	View
VND7	DNA binding domain only	2016-02-06
VND7 Insert Sequence `1 MDNIMQSSMP PGFRFHPTEE ELVGYYLDRK INSMKSALDV IVEIDLYKME 51 PWDIQARCKL GYEEQNEWYF FSHKDRKYPT GTRTNRATAA GFWKATGRDK 101 AVLSKNSVIG MRKTLVYYKG RAPNGRKSDW IMHEYRLQNS ELAPVQEEGW 151 VVCRAFRKPI PNQ`
References `Data are analyzed by array designs with AMADID #s 034149, 034150 in Lindemose et al, Nucleic Acids Res. 2014`