• Home
• Browse
• Downloads
• About
• References

Quick Search:

View All Genomic Data PBM Motif Data PBM Clones Minimize All

-Genomic Data for PAX3				Links
Protein PAX3	UniPROBE Accession Number UP00609	Species Homo sapiens	Domain PAX	Swiss-Prot P23760
Name and Synonyms Name: paired box protein Pax-3. Synonyms:CDHS, HuP2, HUP2, MGC120381, MGC120382, MGC120383, MGC120384, MGC134778, Paired box protein Pax-3, WS1, WS3				IHOP 90831
				NCBI RefSeq NP_852122
Description This gene is a member of the paired box (PAX) family of transcription factors. Members of the PAX family typically contain a paired box domain and a paired-type homeodomain. These genes play critical roles during fetal development. Mutations in paired box gene 3 are associated with Waardenburg syndrome, craniofacial-deafness-hand syndrome, and alveolar rhabdomyosarcoma. The translocation t(2;13)(q35;q14), which represents a fusion between PAX3 and the forkhead gene, is a frequent finding in alveolar rhabdomyosarcoma. Alternative splicing results in transcripts encoding isoforms with different C-termini.				JASPAR None Available

-PBM Motif Data for PAX3_REF_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer AATCGATT E.S. 0.498 AATCGATT E.S. 0.498
Downloads Download the zip of all PAX3_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for PAX3_G48R_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer AATCGATT E.S. 0.496 AATCGATT E.S. 0.496
Downloads Download the zip of all PAX3_G48R PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for PAX3_N47H_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer AATCGATT E.S. 0.498 AATCGATT E.S. 0.498
Downloads Download the zip of all PAX3_N47H PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for PAX3_N47K_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer AATCGATT E.S. 0.497 AATCGATT E.S. 0.497
Downloads Download the zip of all PAX3_N47K PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for PAX3_P50L_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer AATCGATT E.S. 0.496 AATCGATT E.S. 0.496
Downloads Download the zip of all PAX3_P50L PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for PAX3_R270C_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer ACA.TACAT E.S. 0.455 ATGTA.TGT E.S. 0.455
Downloads Download the zip of all PAX3_R270C PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for PAX3_R56L_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer AATCGATT E.S. 0.497 AATCGATT E.S. 0.497
Downloads Download the zip of all PAX3_R56L PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PBM Motif Data for PAX3_Y90H_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble) Reverse Complement (RC)				PWM Save
				Top Kmer AATCGATT E.S. 0.498 AATCGATT E.S. 0.498
Downloads Download the zip of all PAX3_Y90H PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

Download Data for PAX3 (all alleles)
Downloads Download the zip of all PAX3 PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.

-PAX3 Datasets
Clone	Clone Type	Last Modified	Save	View
PAX3_REF	DNA binding domain only
PAX3_REF Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFING RPLPNHIRHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NRRARWRKQA GANQLMAFNH LIPGG
PAX3_G48R	DNA binding domain only
PAX3_G48R Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFINR RPLPNHIRHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NRRARWRKQA GANQLMAFNH LIPGG
PAX3_N47H	DNA binding domain only
PAX3_N47H Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFIHG RPLPNHIRHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NRRARWRKQA GANQLMAFNH LIPGG
PAX3_N47K	DNA binding domain only
PAX3_N47K Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFIKG RPLPNHIRHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NRRARWRKQA GANQLMAFNH LIPGG
PAX3_P50L	DNA binding domain only
PAX3_P50L Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFING RLLPNHIRHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NRRARWRKQA GANQLMAFNH LIPGG
PAX3_R270C	DNA binding domain only
PAX3_R270C Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFING RPLPNHIRHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NCRARWRKQA GANQLMAFNH LIPGG
PAX3_R56L	DNA binding domain only
PAX3_R56L Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFING RPLPNHILHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NRRARWRKQA GANQLMAFNH LIPGG
PAX3_Y90H	DNA binding domain only
PAX3_Y90H Insert Sequence 1    NYPRSGFPLE VSTPLGQGRV NQLGGVFING RPLPNHIRHK IVEMAHHGIR 51   PCVISRQLRV SHGCVSKILC RHQETGSIRP GAIGGSKPKQ VTTPDVEKKI 101  EEYKRENPGM FSWEIRDKLL KDAVCDRNTV PSVSSISRIL RSKFGKGEEE 151  EADLERKEAE ESEKKAKHSI DGILSERASA PQSDEGSDID SEPDLPLKRK 201  QRRSRTTFTA EQLEELERAF ERTHYPDIYT REELAQRAKL TEARVQVWFS 251  NRRARWRKQA GANQLMAFNH LIPGG
References Data are analyzed by array designs with AMADID #s 030236, 015681 in Barrera et al., Science 2016