-Genomic Data for SNAI2 Links
Protein
SNAI2
UniPROBE Accession Number
UP00621
Species
Homo sapiens
Domain
zf-C2H2
Name and Synonyms
Name: zinc finger protein SNAI2.
Synonyms:MGC10182, Neural crest transcription factor Slug, Protein snail homolog 2, SLUG, SLUGH, SLUGH1, WS2D, Zinc finger protein SNAI2
Description
Transcriptional repressor that modulates both activator- dependent and basal transcription. Involved in the generation and migration of neural crest cells. Plays a role in mediating RAF1- induced transcriptional repression of the TJ protein, occludin (OCLN) and subsequent oncogenic transformation of epithelial cells (By similarity). Represses BRCA2 expression by binding to its E2- box-containing silencer and recruiting CTBP1 and HDAC1 in breast cells. In epidermal keratinocytes, binds to the E-box in ITGA3 promoter and represses its transcription. Involved in the regulation of ITGB1 and ITGB4 expression and cell adhesion and proliferation in epidermal keratinocytes. Binds to E-box2 domain of BSG and activates its expression during TGFB1-induced epithelial-mesenchymal transition (EMT) in hepatocytes. Represses E-Cadherin/CDH1 transcription via E-box elements. Involved in osteoblast maturation. Binds to RUNX2 and SOC9 promoters and may act as a positive and negative transcription regulator, respectively, in osteoblasts. Binds to CXCL12 promoter via E-box regions in mesenchymal stem cells and osteoblasts. Plays an essential role in TWIST1-induced EMT and its ability to promote invasion and metastasis.
-PBM Motif Data for SNAI2_REF_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
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PWM
Save
Top Kmer
GCACCTGC E.S. 0.499
GCAGGTGC E.S. 0.499
Downloads
Download the zip of all SNAI2_REF PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for SNAI2_D119E_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
PWM
Save
Top Kmer
GCACCTGC E.S. 0.499
GCAGGTGC E.S. 0.499
Downloads
Download the zip of all SNAI2_D119E PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-PBM Motif Data for SNAI2_T234I_R1
PBM-Derived DNA Binding Site Motif (Seed-And-Wobble)
Image Not Available.  We apologize for the inconvenience.
PWM
Save
Top Kmer
GCACCTGC E.S. 0.499
GCAGGTGC E.S. 0.499
Downloads
Download the zip of all SNAI2_T234I PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Download Data for SNAI2 (all alleles)
Downloads
Download the zip of all SNAI2 PBM files, or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
-SNAI2 Datasets
Clone Clone Type Last Modified Save View
SNAI2_REF DNA binding domain only search save
SNAI2_REF Insert Sequence
1    QSKLSDPHAI EAEKFQCNLC NKTYSTFSGL AKHKQLHCDA QSRKSFSCKY
51   CDKEYVSLGA LKMHIRTHTL PCVCKICGKA FSRPWLLQGH IRTHTGEKPF
101  SCPHCNRAFA DRSNLRAHLQ THSDVKKYQC KNCSKTFSRM SLLHKHEESG
151  CCVAH



SNAI2_D119E DNA binding domain only search save
SNAI2_D119E Insert Sequence
1    QSKLSEPHAI EAEKFQCNLC NKTYSTFSGL AKHKQLHCDA QSRKSFSCKY
51   CDKEYVSLGA LKMHIRTHTL PCVCKICGKA FSRPWLLQGH IRTHTGEKPF
101  SCPHCNRAFA DRSNLRAHLQ THSDVKKYQC KNCSKTFSRM SLLHKHEESG
151  CCVAH



SNAI2_T234I DNA binding domain only search save
SNAI2_T234I Insert Sequence
1    QSKLSDPHAI EAEKFQCNLC NKTYSTFSGL AKHKQLHCDA QSRKSFSCKY
51   CDKEYVSLGA LKMHIRTHTL PCVCKICGKA FSRPWLLQGH IRTHTGEKPF
101  SCPHCNRAFA DRSNLRAHLQ IHSDVKKYQC KNCSKTFSRM SLLHKHEESG
151  CCVAH



References
Data are analyzed by array designs with AMADID #s 030236, 015681 in Barrera et al., Science 2016


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