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| -Genomic Data for Sox4 |
Links |
- Protein
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- UniPROBE Accession Number
- UP00401
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- Species
- Homo sapiens
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- Domain
- HMG_box
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- Swiss-Prot
- Q06945
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- Name and Synonyms
- Name: SRY (sex determining region Y)-box 4 .
Synonyms:Transcription factor SOX-4, OTTHUMP00000039358, SRY-related HMG-box gene 4, ecotropic viral integration site 16, EVI16
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- IHOP
- 92329
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- NCBI Acc.
- None Available
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- Description
- This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins, such as syndecan binding protein (syntenin). The protein may function
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- JASPAR
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None Available
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| -PBM Motif Data for Sox4 |
- PBM-Derived DNA Binding Site Motif
(Seed-And-Wobble)
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- PWM
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Save
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- Top Kmer
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AACAAAGG E.S. 0.481
CCTTTGTT E.S. 0.481
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- Downloads
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Download the
zip
of all Sox4 PBM files
or view the downloads directory for individual files.
Please note that the files which include probe sequence data are protected by an academic research use license,
which can be viewed here.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Sox4
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=401&sourceDB=uniprobe
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| -Sox4 Datasets |
| Gene |
Clone Type |
Last Modified |
Save |
View |
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Sox4 |
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- Sox4 Insert Sequence
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1 MVQQTNNAEN TEALLAGESS DSGAGLELGI ASSPTPGSTA STGGKADDPS
51 WCKTPSGHIK RPMNAFMVWS QIERRKIMEQ SPDMHNAEIS KRLGKRWKLL
101 KDSDKIPFIR EAERLRLKHM ADYPDYKYRP RKKVKSGNAN SSSSAAASSK
151 PGEKGDKVGG SGGGGHGGGG GGGSSNAGGG GGGASGGGAN SKPAQKKSCG
201 SKVAGGAGGG VSKPHAKLIL AGGGGGGKAA AAAAASFAAE QAGAAALLPL
251 GAAADHHSLY KARTPSASAS ASSAASASAA LAAPGKHLAE KKVKRVYLFG
301 GLGTSSSPVG GVGAGADPSD PLGLYEEEGA GCSPDAPSLS
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- References
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Data are analyzed by array design with AMADID # in Scharer et al., Cancer Res 2009
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