Intragenic Sequences

please note that the exonic sequences are not included in the intragenic sequences.

Sequences and alignments downloads

Human (hg16) and alignment sequences
base genome alignment genomes
hg16 sequences
  • mouse (mm3) alignment sequences
  • Rat (rn3) alignment sequences
  • Chimp (panTro1) alignment sequences
  • Chicken (galGal2) alignment sequences


    • Mouse (mm4) and alignment sequences
    base genome alignment genomes
    mm4 sequences
  • Human (hg16) alignment sequences
  • Rat (rn3) alignment sequences


    • Fruitfly (D.melanogaster) and alignment sequences
    base genome alignment genome
    dm1 sequences
  • D.pseudoobscura alignment sequences


    • Yeast (S.cerevisiae) and alignment sequences
    base genome alignment genomes
    sacCer1 sequences
  • sacBay alignment sequences
  • sacCas alignment sequences
  • sacKlu alignment sequences
  • sacKud alignment sequences
  • sacMik alignment sequences
  • sacPar alignment sequences


    • C.elegans and alignment sequences
    base genome alignment genome
    ce2 sequences
  • C.briggsae (cb1) alignment sequences